Recent Submissions

  • Performance Optimization of a Parallel Error Correction Tool 

    Martínez-Sánchez, Marco; Expósito, Roberto R.; Touriño, Juan (MDPI, 2021)
    [Abstract] Due to the continuous development in the field of Next Generation Sequencing (NGS) technologies that have allowed researchers to take advantage of greater genetic samples in less time, it is a matter of relevance ...
  • RGen: Data Generator for Benchmarking Big Data Workloads 

    Pérez-Jove, Rubén; Expósito, Roberto R.; Touriño, Juan (MDPI, 2021)
    [Abstract] This paper presents RGen, a parallel data generator for benchmarking Big Data workloads, which integrates existing features and new functionalities in a standalone tool. The main functionalities developed in ...
  • A Parallel Tool for the Identification of Differentially Methylated Regions in Genomic Analyses 

    Fernández-Fraga, Alejandro; González-Domínguez, Jorge; Touriño, Juan (MDPI, 2021)
    [Abstract] Methylation is a chemical process that modifies DNA through the addition of a methyl group to one or several nucleotides. Discovering differentially methylated regions is an important research field in genomics, ...
  • PolyBench/Python: Benchmarking Python Environments With Polyhedral Optimizations 

    Abella González, Miguel Ángel; Carollo-Fernández, Pedro; Pouchet, Louis-Noël; Rastello, Fabrice; Rodríguez, Gabriel (Association for Computing Machinery, 2021-03)
    [Abstract] Python has become one of the most used and taught languages nowadays. Its expressiveness, cross-compatibility and ease of use have made it popular in areas as diverse as finance, bioinformatics or machine ...
  • Multimethod Optimization for Reverse Engineering of Complex Biological Networks 

    González, Patricia; Penas, David R.; Pardo, Xoán C.; Banga, Julio R.; Doallo, Ramón (Association for Computing Machinery, 2018-09)
    [Abstract] Optimization problems appears in different areas of science and engineering. This paper considers the general problem of reverse engineering in computational biology by means of mixed-integer nonlinear dynamic ...

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