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Resilient MPI applications using an application-level checkpointing framework and ULFM
(Springer New York LLC, 2017-01)
[Abstract] Future exascale systems, formed by millions of cores, will present high failure rates, and long-running applications will need to make use of new fault tolerance techniques to ensure successful execution completion. ...
Analysis of Performance-impacting Factors on Checkpointing Frameworks: The CPPC Case Study
(Oxford University Press, 2011-11-01)
[Abstract] This paper focuses on the performance evaluation of Compiler for Portable Checkpointing (CPPC), a tool for the checkpointing of parallel message-passing applications. Its performance and the factors that impact ...
ParBiBit: Parallel tool for binary biclustering on modern distributed-memory systems
(PLoS, 2018)
[Abstract]: Biclustering techniques are gaining attention in the analysis of large-scale datasets as they identify two-dimensional submatrices where both rows and columns are correlated. In this work we present ParBiBit, ...
Improving Scalability of Application-Level Checkpoint-Recovery by Reducing Checkpoint Sizes
(Springer Japan KK, 2013)
[Abstract] The execution times of large-scale parallel applications on nowadays multi/many-core systems are usually longer than the mean time between failures. Therefore, parallel applications must tolerate hardware failures ...
Parallel ant colony optimization for the training of cell signaling networks
(Elsevier, 2022)
[Abstract]: Acquiring a functional comprehension of the deregulation of cell signaling networks in disease allows progress in the development of new therapies and drugs. Computational models are becoming increasingly popular ...
pRIblast: A highly efficient parallel application for comprehensive lncRNA–RNA interaction prediction
(Elsevier, 2023-01)
[Abstract]: Long non-coding RNAs (lncRNAs) play a key role in several biological processes and scientists are constantly trying to come up with new strategies to elucidate their functions. One common approach to characterize ...
In-memory application-level checkpoint-based migration for MPI programs
(Springer New York LLC, 2014)
[Abstract] Process migration provides many benefits for parallel environments including dynamic load balancing, data access locality or fault tolerance. This paper describes an in-memory application-level checkpoint-based ...
CPPC: a compiler‐assisted tool for portable checkpointing of message‐passing applications
(John Wiley & Sons Ltd., 2010-11-19)
[Abstract] With the evolution of high‐performance computing toward heterogeneous, massively parallel systems, parallel applications have developed new checkpoint and restart necessities. Whether due to a failure in the ...
General‐purpose computation on GPUs for high performance cloud computing
(John Wiley & Sons Ltd., 2013-08)
[Abstract] Cloud computing is offering new approaches for High Performance Computing (HPC) as it provides dynamically scalable resources as a service over the Internet. In addition, General‐Purpose computation on Graphical ...
Scalable PGAS collective operations in NUMA clusters
(Springer New York LLC, 2014-12)
[Abstract] The increasing number of cores per processor is turning manycore-based systems in pervasive. This involves dealing with multiple levels of memory in non uniform memory access (NUMA) systems and processor cores ...