ListarGI-GAC - Artigos por tema "MPI"
Mostrando ítems 1-20 de 27
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An Efficient Ant Colony Optimization Framework for HPC Environments
(Elsevier, 2022)[Abstract] Combinatorial optimization problems arise in many disciplines, both in the basic sciences and in applied fields such as engineering and economics. One of the most popular combinatorial optimization methods is ... -
Analysis of Performance-impacting Factors on Checkpointing Frameworks: The CPPC Case Study
(Oxford University Press, 2011-11-01)[Abstract] This paper focuses on the performance evaluation of Compiler for Portable Checkpointing (CPPC), a tool for the checkpointing of parallel message-passing applications. Its performance and the factors that impact ... -
Assessing resilient versus stop-and-restart fault-tolerant solutions in MPI applications
(Springer New York LLC, 2017-01)[Abstract] The Message Passing Interface (MPI) standard is the most popular parallel programming model for distributed systems. However, it lacks fault-tolerance support and, traditionally, failures are addressed with ... -
CPPC: a compiler‐assisted tool for portable checkpointing of message‐passing applications
(John Wiley & Sons Ltd., 2010-11-19)[Abstract] With the evolution of high‐performance computing toward heterogeneous, massively parallel systems, parallel applications have developed new checkpoint and restart necessities. Whether due to a failure in the ... -
Fast search of third-order epistatic interactions on CPU and GPU clusters
(Sage Publications Ltd., 2019-05-27)[Abstract] Genome-Wide Association Studies (GWASs), analyses that try to find a link between a given phenotype (such as a disease) and genetic markers, have been growing in popularity in the recent years. Relations between ... -
Fault tolerance of MPI applications in exascale systems: The ULFM solution
(Elsevier BV * North-Holland, 2020-05)[Abstract] The growth in the number of computational resources used by high-performance computing (HPC) systems leads to an increase in failure rates. Fault-tolerant techniques will become essential for long-running ... -
Fiuncho: a program for any-order epistasis detection in CPU clusters
(Springer, 2022)[Abstract]: Epistasis can be defined as the statistical interaction of genes during the expression of a phenotype. It is believed that it plays a fundamental role in gene expression, as individual genetic variants have ... -
General‐purpose computation on GPUs for high performance cloud computing
(John Wiley & Sons Ltd., 2013-08)[Abstract] Cloud computing is offering new approaches for High Performance Computing (HPC) as it provides dynamically scalable resources as a service over the Internet. In addition, General‐Purpose computation on Graphical ... -
Implementing cloud-based parallel metaheuristics: an overview
(Universidad Nacional de la Plata - Facultad de Informatica, 2018-12-12)[Abstract] Metaheuristics are among the most popular methods for solving hard global optimization problems in many areas of science and engineering. Their parallel im- plementation applying HPC techniques is a common ... -
Improving Scalability of Application-Level Checkpoint-Recovery by Reducing Checkpoint Sizes
(Springer Japan KK, 2013)[Abstract] The execution times of large-scale parallel applications on nowadays multi/many-core systems are usually longer than the mean time between failures. Therefore, parallel applications must tolerate hardware failures ... -
In-memory application-level checkpoint-based migration for MPI programs
(Springer New York LLC, 2014)[Abstract] Process migration provides many benefits for parallel environments including dynamic load balancing, data access locality or fault tolerance. This paper describes an in-memory application-level checkpoint-based ... -
Local Rollback for Resilient Mpi Applications With Application-Level Checkpointing and Message Logging
(Elsevier BV * North-Holland, 2019-02)[Abstract] The resilience approach generally used in high-performance computing (HPC) relies on coordinated checkpoint/restart, a global rollback of all the processes that are running the application. However, in many ... -
MPI and UPC broadcast, scatter and gather algorithms in Xeon Phi
(John Wiley & Sons Ltd., 2016-05-06)[Abstract] Accelerators have revolutionised the high performance computing (HPC) community. Despite their advantages, their very specific programming models and limited communication capabilities have kept them in a ... -
MPI-dot2dot: A Parallel Tool to Find DNA Tandem Repeats on Multicore Clusters
(Springer, 2022)[Abstract] Tandem Repeats (TRs) are segments that occur several times in a DNA sequence, and each copy is adjacent to other. In the last few years, TRs have gained significant attention as they are thought to be related ... -
MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems
(Oxford University Press, 2016)[Abstracts] MSAProbs is a state-of-the-art protein multiple sequence alignment tool based on hidden Markov models. It can achieve high alignment accuracy at the expense of relatively long runtimes for large-scale input ... -
Parallel ant colony optimization for the training of cell signaling networks
(Elsevier, 2022)[Abstract]: Acquiring a functional comprehension of the deregulation of cell signaling networks in disease allows progress in the development of new therapies and drugs. Computational models are becoming increasingly popular ... -
Parallel Brownian dynamics simulations with the message-passing and PGAS programming models
(Elsevier BV, 2013-04)[Abstract] The simulation of particle dynamics is among the most important mechanisms to study the behavior of molecules in a medium under specific conditions of temperature and density. Several models can be used to compute ... -
Parallel-FST: A feature selection library for multicore clusters
(Elsevier, 2022-11)[Abstract]: Feature selection is a subfield of machine learning focused on reducing the dimensionality of datasets by performing a computationally intensive process. This work presents Parallel-FST, a publicly available ... -
PARamrfinder: detecting allele-specific DNA methylation on multicore clusters
(Springer, 2024-01)[Abstract]: The discovery of Allele-Specific Methylation (ASM) is an important research field in biology as it regulates genomic imprinting, which has been identified as the cause of some genetic diseases. Nevertheless, ... -
ParBiBit: Parallel tool for binary biclustering on modern distributed-memory systems
(PLoS, 2018)[Abstract]: Biclustering techniques are gaining attention in the analysis of large-scale datasets as they identify two-dimensional submatrices where both rows and columns are correlated. In this work we present ParBiBit, ...
