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Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures
(Institute of Electrical and Electronics Engineers, 2016-08)
[Abstract] Development of new methods to detect pairwise epistasis, such as SNP-SNP interactions, in Genome-Wide Association Studies is an important task in bioinformatics as they can help to explain genetic influences on ...
FastMPJ: a scalable and efficient Java message-passing library
(Springer New York LLC, 2014)
[Abstract] The performance and scalability of communications are key for high performance computing (HPC) applications in the current multi-core era. Despite the significant benefits (e.g., productivity, portability, ...
General‐purpose computation on GPUs for high performance cloud computing
(John Wiley & Sons Ltd., 2013-08)
[Abstract] Cloud computing is offering new approaches for High Performance Computing (HPC) as it provides dynamically scalable resources as a service over the Internet. In addition, General‐Purpose computation on Graphical ...
Design of Scalable Java Communication Middleware for Multi-Core Systems
(Oxford University Press, 2013-02-01)
[Abstract] This paper presents smdev, a shared memory communication middleware for multi-core systems. smdev provides a simple and powerful messaging application program interface that is able to exploit the underlying ...
Evaluation of Java for General Purpose GPU Computing
(IEEE Computer Society, 2013-07-01)
[Abstract] The presence of many-core units as accelerators has been increasing due to their ability to improve the performance of highly parallel workloads. General Purpose GPU(GPGPU) computing has allowed the graphical ...
Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform
(Springer Netherlands, 2013-12)
[Abstract] Cloud computing is currently being explored by the scientific community to assess its suitability for High Performance Computing (HPC) environments. In this novel paradigm, compute and storage resources, as well ...
Low‐latency Java communication devices on RDMA‐enabled networks
(John Wiley & Sons Ltd., 2015)
[Abstract] Providing high‐performance inter‐node communication is a key capability for running high performance computing applications efficiently on parallel architectures. In fact, current systems deployments are aggregating ...
Performance Evaluation of Data-Intensive Computing Applications on a Public IaaS Cloud
(Oxford University Press, 2016)
[Abstract] The advent of cloud computing technologies, which dynamically provide on-demand access to computational resources over the Internet, is offering new possibilities to many scientists and researchers. Nowadays, ...
Performance analysis of HPC applications in the cloud
(Elsevier BV * North-Holland, 2013-01)
[Abstract] The scalability of High Performance Computing (HPC) applications depends heavily on the efficient support of network communications in virtualized environments. However, Infrastructure as a Service (IaaS) providers ...
Java in the High Performance Computing arena: Research, practice and experience
(Elsevier BV, 2013-05-01)
[Abstract] The rising interest in Java for High Performance Computing (HPC) is based on the appealing features of this language for programming multi-core cluster architectures, particularly the built-in networking and ...