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pRIblast: A highly efficient parallel application for comprehensive lncRNA–RNA interaction prediction
(Elsevier, 2023-01)
[Abstract]: Long non-coding RNAs (lncRNAs) play a key role in several biological processes and scientists are constantly trying to come up with new strategies to elucidate their functions. One common approach to characterize ...
ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters
(IEEE, 2023)
[Abstract]: The discovery of Differentially Methylated (DM) regions is an important research field in biology, as it can help to anticipate the risk of suffering from specific diseases. Nevertheless, the high computational ...
Performance analysis of HPC applications in the cloud
(Elsevier BV * North-Holland, 2013-01)
[Abstract] The scalability of High Performance Computing (HPC) applications depends heavily on the efficient support of network communications in virtualized environments. However, Infrastructure as a Service (IaaS) providers ...
Parallel simulation of Brownian dynamics on shared memory systems with OpenMP and Unified Parallel C
(Springer New York LLC, 2013-09)
[Abstract] The simulation of particle dynamics is an essential method to analyze and predict the behavior of molecules in a given medium. This work presents the design and implementation of a parallel simulation of Brownian ...
Running scientific codes on amazon EC2: a performance analysis of five high-end instances
(Springer New York LLC, 2013)
[Abstract] Amazon Web Services (AWS) is a well-known public Infrastructure-as-a-Service (IaaS) provider whose Elastic Computing Cloud (EC2) o ering includes some instances, known as cluster instances, aimed at High-Performance ...