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Scalable PGAS collective operations in NUMA clusters
(Springer New York LLC, 2014-12)
[Abstract] The increasing number of cores per processor is turning manycore-based systems in pervasive. This involves dealing with multiple levels of memory in non uniform memory access (NUMA) systems and processor cores ...
Parallel Brownian dynamics simulations with the message-passing and PGAS programming models
(Elsevier BV, 2013-04)
[Abstract] The simulation of particle dynamics is among the most important mechanisms to study the behavior of molecules in a medium under specific conditions of temperature and density. Several models can be used to compute ...
Parallel simulation of Brownian dynamics on shared memory systems with OpenMP and Unified Parallel C
(Springer New York LLC, 2013-09)
[Abstract] The simulation of particle dynamics is an essential method to analyze and predict the behavior of molecules in a given medium. This work presents the design and implementation of a parallel simulation of Brownian ...