• Accelerating binary biclustering on platforms with CUDA-enabled GPUs 

      González-Domínguez, Jorge; Expósito, Roberto R. (Elsevier Ltd, 2018)
      [Abstract]: Data mining is nowadays essential in many scientific fields to extract valuable information from large input datasets and transform it into an understandable structure. For instance, biclustering techniques are ...
    • CUDA-JMI: Acceleration of feature selection on heterogeneous systems 

      González-Domínguez, Jorge; Expósito, Roberto R.; Bolón-Canedo, Verónica (Elsevier, 2020-01)
      [Abstract]: Feature selection is a crucial step nowadays in machine learning and data analytics to remove irrelevant and redundant characteristics and thus to provide fast and reliable analyses. Many research works have ...
    • Efficient high-precision integer multiplication on the GPU 

      Pérez Diéguez, Adrián; Amor, Margarita; Doallo, Ramón; Nukada, Akira; Matsuoka, Satoshi (SAGE Journals, 2022-03)
      [Abstract]: The multiplication of large integers, which has many applications in computer science, is an operation that can be expressed as a polynomial multiplication followed by a carry normalization. This work develops ...
    • Fast search of third-order epistatic interactions on CPU and GPU clusters 

      Ponte-Fernández, Christian; González-Domínguez, Jorge; Martín, María J. (Sage Publications Ltd., 2019-05-27)
      [Abstract] Genome-Wide Association Studies (GWASs), analyses that try to find a link between a given phenotype (such as a disease) and genetic markers, have been growing in popularity in the recent years. Relations between ...
    • GPU Accelerated Molecular Docking Simulation with Genetic Algorithms 

      Altuntas, Serkan; Bozkus, Zeki; Fraguela, Basilio B. (Springer, Cham, 2016)
      [Abstract] Receptor-Ligand Molecular Docking is a very computationally expensive process used to predict possible drug candidates for many diseases. A faster docking technique would help life scientists to discover better ...
    • GPU-accelerated exhaustive search for third-order epistatic interactions in case–control studies 

      González-Domínguez, Jorge; Schmidt, Bertil (Elsevier Ltd, 2015)
      [Abstract] Interest in discovering combinations of genetic markers from case–control studies, such as Genome Wide Association Studies (GWAS), that are strongly associated to diseases has increased in recent years. Detecting ...
    • Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model 

      González-Domínguez, Jorge; Kässens, Jan Christian; Wienbrandt, Lars; Schmidt, Bertil (Sage Publications Ltd., 2015)
      [Abstract] Detecting epistasis, such as 2-SNP interactions, in genome-wide association studies (GWAS) is an important but time consuming operation. Consequently, GPUs have already been used to accelerate these studies, ...
    • Parallelization of shallow water simulations on current multi-threaded systems 

      Lobeiras Blanco, Jacobo; Viñas Buceta, Moisés; Amor, Margarita; Fraguela, Basilio B.; Arenaz Silva, Manuel; García Rodríguez, José Antonio; Castro, M.J. (SAGE Journals, 2013-11)
      [Abstract]: In this work, several parallel implementations of a numerical model of pollutant transport on a shallow water system are presented. These parallel implementations are developed in two phases. First, the sequential ...
    • Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs 

      Jünger, Daniel; Hundt, Christian; González-Domínguez, Jorge; Schmidt, Bertil (Springer, 2017)
      [Abstract]: The discovery of higher-order epistatic interactions is an important task in the field of genome wide association studies which allows for the identification of complex interaction patterns between multiple ...
    • STuning-DL: Model-Driven Autotuning of Sparse GPU Kernels for Deep Learning 

      López Castro, Roberto; Andrade, Diego; Fraguela, Basilio B. (Institute of Electrical and Electronics Engineers, 2024-05)
      [Abstract]: The relentless growth of modern Machine Learning models has spurred the adoption of sparsification techniques to simplify their architectures and reduce the computational demands. Network pruning has demonstrated ...
    • Tree Partitioning Reduction: A New Parallel Partition Method for Solving Tridiagonal Systems 

      Pérez Diéguez, Adrián; Amor, Margarita; Doallo, Ramón (Association for Computing Machinery (ACM), 2019-08)