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SparkEC: speeding up alignment-based DNA error correction tools
(BioMed Central (Springer), 2022)
[Abstract]: In recent years, huge improvements have been made in the context of sequencing genomic data under what is called Next Generation Sequencing (NGS). However, the DNA reads generated by current NGS platforms are ...
SMusket: Spark-based DNA error correction on distributed-memory systems
(Elsevier B.V., 2020)
[Abstract]: Next-Generation Sequencing (NGS) technologies have revolutionized genomics research over the last decade, bringing new opportunities for scientists to perform groundbreaking biological studies. Error correction ...
Accelerating the quality control of genetic sequences through stream processing
(Association for Computing Machinery, 2023)
[Abstract]: Quality control of DNA sequences is an important data preprocessing step in many genomic analyses. However, all existing parallel tools for this purpose are based on a batch processing model, needing to have ...
SeQual-Stream: approaching stream processing to quality control of NGS datasets
(BMC, 2023-10)
[Abstract]: Background
Quality control of DNA sequences is an important data preprocessing step in many genomic analyses. However, all existing parallel tools for this purpose are based on a batch processing model, ...