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Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model
(Sage Publications Ltd., 2015)
[Abstract] Detecting epistasis, such as 2-SNP interactions, in genome-wide association studies (GWAS) is an important but time consuming operation. Consequently, GPUs have already been used to accelerate these studies, ...
Improving Scalability of Application-Level Checkpoint-Recovery by Reducing Checkpoint Sizes
(Springer Japan KK, 2013)
[Abstract] The execution times of large-scale parallel applications on nowadays multi/many-core systems are usually longer than the mean time between failures. Therefore, parallel applications must tolerate hardware failures ...
Solving Large Problem Sizes of Index-Digit Algorithms on GPU: FFT and Tridiagonal System Solvers
(Institute of Electrical and Electronics Engineers, 2018)
[Abstract] Current Graphics Processing Units (GPUs) are capable of obtaining high computational performance in scientific applications. Nevertheless, programmers have to use suitable parallel algorithms for these architectures ...
Web-GIS tool for the management of rural land markets. Application to the Land Bank of Galicia (NWSpain)
(Springer, 2013)
[Abstract] Land abandonment and stagnation of rural markets in the last few years have become one of the main concerns of rural administrations. The use of Web and GIS (Geographic Information System) technologies can help ...
GVLiDAR: an interactive web-based visualization framework to support geospatial measures on lidar data
(Taylor & Francis, 2017)
[Abstract] In recent years lidar technology has experienced a noticeable increase in its relevance and usage in a number of scientific fields. Therefore, software capable of handling lidar data becomes a key point in those ...
Extending the Globus Information Service with the Common Information Model
(IEEE Computer Society, 2011-07-14)
[Abstract] The need of task-adapted and complete information for the management of resources is a well known issue in Grid computing. Globus Toolkit 4 (GT4) includes the Monitoring and Discovery System component (MDS4) to ...
Integrating the common information model with MDS4
(IEEE Computer Society, 2008-10-31)
[Abstract] The management and monitoring of static and dynamic resources is a key issue in grid environments. Information models are an abstract representation of software and hardware aspects of these resources, a common ...
Parallelization of ARACNe, an Algorithm for the Reconstruction of Gene Regulatory Networks
(M D P I AG, 2019-07-31)
[Abstract] Gene regulatory networks are graphical representations of molecular regulators that interact with each other and with other substances in the cell to govern the gene expression. There are different computational ...
SeQual: Big Data Tool to Perform Quality Control and Data Preprocessing of Large NGS Datasets
(Institute of Electrical and Electronics Engineers, 2020-08-07)
[Abstract]
This paper presents SeQual, a scalable tool to efficiently perform quality control of large genomic datasets. Our tool currently supports more than 30 different operations (e.g., filtering, trimming, formatting) ...
Compiler support for parallel code generation through kernel recognition
(IEEE Computer Society, 2004-06-07)
[Abstract] Summary form only given. The automatic parallelization of loops that contain complex computations is still a challenge for current parallelizing compilers. The main limitations are related to the analysis of ...