• Automated design of synthetic biocircuits in the stochastic regime 

      Sequeiros Ferreiro, Carlos Xosé; Vázquez, Carlos; Banga, Julio R.; Otero-Muras, Irene (IFAC Secretariat / Elsevier, 2022)
      [Abstract]: In this work, we present an optimization-based design strategy for gene regulatory networks (GRNs) in the stochastic regime (i.e., in the presence of molecular noise). The approach exploits a recently developed ...
    • SELANSI: A toolbox for simulation of stochastic gene regulatory networks 

      Pájaro Diéguez, Manuel; Otero-Muras, Irene; Vázquez, Carlos; Alonso, Antonio (Oxford University Press, 2018-03)
      [Abstract]: Motivation Gene regulation is inherently stochastic. In many applications concerning Systems and Synthetic Biology such as the reverse engineering and the de novo design of genetic circuits, stochastic effects ...