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http://hdl.handle.net/2183/33919 Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
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Gaudêncio, Susana P.
Bayram, Engin
Lukić Bilela, Lada
Cueto, Mercedes
Díaz-Marrero, Ana R.
Haznedaroglu, Berat Zeki
Mandalakis, Manolis
Pereira, Florbela
Reyes, Fernando
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Gaudêncio, S.P.; Bayram, E.; Lukić Bilela, L.; Cueto, M.; Díaz-Marrero, A.R.; Haznedaroglu, B.Z.; Jimenez, C.; Mandalakis, M.; Pereira, F.; Reyes, F.; et al. Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation. Mar. Drugs 2023, 21, 308. https://doi.org/10.3390/md21050308
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Abstract
[Abstract] Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particularly the determination of the absolute configuration of metabolites with stereogenic centers. This review comprehensively focuses on recent technological and instrumental advances, highlighting the development of methods that alleviate these obstacles, paving the way for accelerating NP discovery towards biotechnological applications. Herein, we emphasize the most innovative high-throughput tools and methods for advancing bioactivity screening, NP chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, and three-dimensional NP structure elucidation.
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This article belongs to the Collection Ocean4Biotech
Keywords
Blue biotechnology Natural products High-Throughput Screening (HTS) Mode of Action (MoA) Molecular networking Dereplication Natural products databases Global Natural Product Social Molecular Networking (GNPS) Informatic chemometrics High Throughput Next-Generation Sequencing (HT/NGS) Computer Assisted Structure Elucidation (CASE) Relative and absolute configuration determination in structure elucidation
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