• Evaluation of Java for General Purpose GPU Computing 

      Docampo, Jorge; Ramos Garea, Sabela; López Taboada, Guillermo; Expósito, Roberto R.; Touriño, Juan; Doallo, Ramón (IEEE Computer Society, 2013-07-01)
      [Abstract] The presence of many-core units as accelerators has been increasing due to their ability to improve the performance of highly parallel workloads. General Purpose GPU(GPGPU) computing has allowed the graphical ...
    • Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures 

      González-Domínguez, Jorge; Ramos Garea, Sabela; Touriño, Juan; Schmidt, Bertil (Institute of Electrical and Electronics Engineers, 2016-08)
      [Abstract] Development of new methods to detect pairwise epistasis, such as SNP-SNP interactions, in Genome-Wide Association Studies is an important task in bioinformatics as they can help to explain genetic influences on ...
    • Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems 

      González-Domínguez, Jorge; Wienbrandt, Lars; Kässens, Jan Christian; Ellinghaus, David; Schimmler, Manfred; Schmidt, Bertil (Institute of Electrical and Electronics Engineers, 2015)
      [Abstract] High-throughput genotyping technologies (such as SNP-arrays) allow the rapid collection of up to a few million genetic markers of an individual. Detecting epistasis (based on 2-SNP interactions) in Genome-Wide ...
    • Solving Large Problem Sizes of Index-Digit Algorithms on GPU: FFT and Tridiagonal System Solvers 

      Pérez Diéguez, Adrián; Amor, Margarita; Lobeiras Blanco, Jacobo; Doallo, Ramón (Institute of Electrical and Electronics Engineers, 2018)
      [Abstract] Current Graphics Processing Units (GPUs) are capable of obtaining high computational performance in scientific applications. Nevertheless, programmers have to use suitable parallel algorithms for these architectures ...