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Design of efficient Java message-passing collectives on multi-core clusters
(Springer New York LLC, 2011-02)
[Abstract] This paper presents a scalable and efficient Message-Passing in Java (MPJ) collective communication library for parallel computing on multi-core architectures. The continuous increase in the number of cores per ...
Design of scalable Java message-passing communications over InfiniBand
(Springer New York LLC, 2012-07)
[Abstract] This paper presents ibvdev a scalable and efficient low-level Java message-passing communication device over InfiniBand. The continuous increase in the number of cores per processor underscores the need for ...
Design and Implementation of an extended collectives library for unified Parallel C
(Springer New York LLC, 2013)
[Abstract] Unified Parallel C (UPC) is a parallel extension of ANSI C based on the Partitioned Global Address Space (PGAS) programming model, which provides a shared memory view that simplifies code development while it ...
Performance analysis of HPC applications in the cloud
(Elsevier BV * North-Holland, 2013-01)
[Abstract] The scalability of High Performance Computing (HPC) applications depends heavily on the efficient support of network communications in virtualized environments. However, Infrastructure as a Service (IaaS) providers ...
Java in the High Performance Computing arena: Research, practice and experience
(Elsevier BV, 2013-05-01)
[Abstract] The rising interest in Java for High Performance Computing (HPC) is based on the appealing features of this language for programming multi-core cluster architectures, particularly the built-in networking and ...
ScalaParBiBit: Scaling the Binary Biclustering in Distributed-Memory Systems
(SpringerLink, 2021-03-19)
[Abstract] Biclustering is a data mining technique that allows us to find groups of rows and columns that are highly correlated in a 2D dataset. Although there exist several software applications to perform biclustering, ...
Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis
(Elsevier Ireland Ltd., 2017)
[Abstract] Background and objectives
The analysis of the interference patterns on the tear film lipid layer is a useful clinical test to diagnose dry eye syndrome. This task can be automated with a high degree of accuracy ...
Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++
(Johannes Gutenberg University Mainz, 2016)
[Abstract]: The growth of next-generation sequencing (NGS) datasets poses a challenge to the alignment of reads to reference genomes in terms of alignment quality and execution speed. Some available aligners have been shown ...
Scalable PGAS collective operations in NUMA clusters
(Springer New York LLC, 2014-12)
[Abstract] The increasing number of cores per processor is turning manycore-based systems in pervasive. This involves dealing with multiple levels of memory in non uniform memory access (NUMA) systems and processor cores ...
A general and efficient divide-and-conquer algorithm framework for multi-core clusters
(SpringerLink, 2017)
[Abstract]Divide-and-conquer is one of the most important patterns of parallelism, being applicable to a large variety of problems. In addition, the most powerful parallel systems available nowadays are computer clusters ...