Now showing items 1-20 of 27

    • A 2D algorithm with asymmetric workload for the UPC conjugate gradient method 

      González Domínguez, Jorge; Marques, Osni A.; Martín Santamaría, María José; Touriño, Juan (Springer New York LLC, 2014)
      [Abstract] This paper examines four different strategies, each one with its own data distribution, for implementing the parallel conjugate gradient (CG) method and how they impact communication and overall performance. ...
    • A Grid Portal for an Undergraduate Parallel Programming Course 

      Touriño, Juan; Martín Santamaría, María José; Tarrío, Jacobo; Arenaz Silva, Manuel (Institute of Electrical and Electronics Engineers, 2005-08)
      [Abstract] This paper describes an experience of designing and implementing a portal to support transparent remote access to supercomputing facilities to students enrolled in an undergraduate parallel programming course. ...
    • A heuristic approach for the automatic insertion of checkpoints in message-passing codes 

      Rodríguez Álvarez, Gabriel; Martín Santamaría, María José; González, Patricia; Touriño, Juan (Technische Universitaet Graz * Institut fuer Informationssysteme und Computer Medien,Graz University of Technology, Institute for Information Systems and Computer Media, 2009-08)
      [Abstract] Checkpointing tools may be typically implemented at two different abstraction levels: at the system level or at the application level. The latter has become a more popular alternative due to its flexibility and ...
    • A portable and adaptable fault tolerance solution for heterogeneous applications 

      Losada, Nuria; Fraguela, Basilio B.; González Gómez, Patricia; Martín Santamaría, María José (Academic Press, 2017-06)
      [Abstract] Heterogeneous systems have increased their popularity in recent years due to the high performance and reduced energy consumption capabilities provided by using devices such as GPUs or Xeon Phi accelerators. This ...
    • Analysis of Performance-impacting Factors on Checkpointing Frameworks: The CPPC Case Study 

      Rodríguez Álvarez, Gabriel; Martín Santamaría, María José; Touriño, Juan; González, Patricia (Oxford University Press, 2011-11-01)
      [Abstract] This paper focuses on the performance evaluation of Compiler for Portable Checkpointing (CPPC), a tool for the checkpointing of parallel message-passing applications. Its performance and the factors that impact ...
    • Assessing resilient versus stop-and-restart fault-tolerant solutions in MPI applications 

      Losada, Nuria; Martín Santamaría, María José; González Gómez, Patricia (Springer New York LLC, 2017-01)
      [Abstract] The Message Passing Interface (MPI) standard is the most popular parallel programming model for distributed systems. However, it lacks fault-tolerance support and, traditionally, failures are addressed with ...
    • Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite 

      González Domínguez, Jorge; López Taboada, Guillermo; Fraguela, Basilio B.; Martín Santamaría, María José; Touriño, Juan (Pergamon Press, 2012-03)
      [Abstract] Servet is a suite of benchmarks focused on detecting a set of parameters with high influence on the overall performance of multicore systems. These parameters can be used for autotuning codes to increase their ...
    • Compiler-Assisted Checkpointing of Parallel Codes: The Cetus and LLVM Experience 

      Rodríguez Álvarez, Gabriel; Martín Santamaría, María José; González, Patricia; Touriño, Juan; Doallo Biempica, Ramón (Springer New York LLC, 2013)
      [Abstract] With the evolution of high-performance computing, parallel applications have developed an increasing necessity for fault tolerance, most commonly provided by checkpoint and restart techniques. Checkpointing tools ...
    • CPPC: a compiler‐assisted tool for portable checkpointing of message‐passing applications 

      Rodríguez Álvarez, Gabriel; Martín Santamaría, María José; González, Patricia; Touriño, Juan; Doallo Biempica, Ramón (John Wiley & Sons Ltd., 2010-11-19)
      [Abstract] With the evolution of high‐performance computing toward heterogeneous, massively parallel systems, parallel applications have developed new checkpoint and restart necessities. Whether due to a failure in the ...
    • Exploiting locality in the run-time parallelization of irregular loops 

      Martín Santamaría, María José; Singh, David E.; Touriño, Juan; Rivera, Francisco F. (C R C Press, LLC, 2002-12-10)
      [Abstract] The goal of this work is the efficient parallel execution of loops with indirect array accesses, in order to be embedded in a parallelizing compiler framework. In this kind of loop pattern, dependences can not ...
    • Extending an Application-Level Checkpointing Tool to Provide Fault Tolerance Support to OpenMP Applications 

      Losada, Nuria; Martín Santamaría, María José; Rodríguez Álvarez, Gabriel; González Gómez, Patricia (Technische Universitaet Graz * Institut fuer Informationssysteme und Computer Medien,Graz University of Technology, Institute for Information Systems and Computer Media, 2014-09)
      [Abstract] Despite the increasing popularity of shared-memory systems, there is a lack of tools for providing fault tolerance support to shared-memory applications. CPPC (ComPiler for Portable Checkpointing) is an ...
    • Extending the Globus Information Service with the Common Information Model 

      Díaz, Iván; Fernández, G.; González, P.; Martín Santamaría, María José; Touriño, Juan (IEEE Computer Society, 2011-07-14)
      [Abstract] The need of task-adapted and complete information for the management of resources is a well known issue in Grid computing. Globus Toolkit 4 (GT4) includes the Monitoring and Discovery System component (MDS4) to ...
    • Failure Avoidance in MPI Applications Using an Application-Level Approach 

      Cores González, Iván; Rodríguez Álvarez, Gabriel; González Gómez, Patricia; Martín Santamaría, María José (Oxford University Press, 2014)
      [Abstract] Execution times of large-scale computational science and engineering parallel applications are usually longer than the mean-time-between-failures. For this reason, hardware failures must be tolerated by the ...
    • Improving Scalability of Application-Level Checkpoint-Recovery by Reducing Checkpoint Sizes 

      Cores González, Iván; Rodríguez Álvarez, Gabriel; Martín Santamaría, María José; González Gómez, Patricia; Rodríguez Osorio, Roberto (Springer Japan KK, 2013)
      [Abstract] The execution times of large-scale parallel applications on nowadays multi/many-core systems are usually longer than the mean time between failures. Therefore, parallel applications must tolerate hardware failures ...
    • In-memory application-level checkpoint-based migration for MPI programs 

      Cores González, Iván; Rodríguez Álvarez, Gabriel; Martín Santamaría, María José; González Gómez, Patricia (Springer New York LLC, 2014)
      [Abstract] Process migration provides many benefits for parallel environments including dynamic load balancing, data access locality or fault tolerance. This paper describes an in-memory application-level checkpoint-based ...
    • Integrating the common information model with MDS4 

      Díaz, Iván; Fernández, G.; Martín Santamaría, María José; González, Patricia; Touriño, Juan (IEEE Computer Society, 2008-10-31)
      [Abstract] The management and monitoring of static and dynamic resources is a key issue in grid environments. Information models are an abstract representation of software and hardware aspects of these resources, a common ...
    • Novel parallelization of simulated annealing and Hooke & Jeeves search algorithms for multicore systems with application to complex fisheries stock assessment models 

      Vázquez Pardo, Sergio; Martín Santamaría, María José; Fraguela, Basilio B.; Gómez, Andrés; Rodríguez, Aurelio; Elvarsson, Bjarki Þór (Elsevier Ltd, 2016-11)
      [Abstract] Estimating parameters of a statistical fisheries assessment model typically involves a comparison of disparate datasets to a forward simulation model through a likelihood function. In all but trivial cases the ...
    • On processing extreme data 

      Petcu, Dana; Iuhasz, Gabriel; Pop, Daniel; Talia, Domenico; Carretero, Jesús; Prodan, Radu; Fahringer, Thomas; Grasso, Ivan; Doallo Biempica, Ramón; Martín Santamaría, María José; Fraguela, Basilio B.; Trobec, Roman; Depolli, Matjaz; Almeida Rodriguez, Francisco; Sande, Francisco de; Da Costa, Georges; Pierson, Jean-Marc; Anastasiadis, Stergios; Bartzokas, Aristides; Lolis, Christos; Gonçalves, Pedro; Brito, Fabrice; Brown, Nick (Universitatea de Vest din Timisoara,West University of Timisoara, 2016)
      [Abstract] Extreme Data is an incarnation of Big Data concept distinguished by the massive amounts of data that must be queried, communicated and analyzed in near real-time by using a very large number of memory or storage ...
    • Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis 

      González Domínguez, Jorge; Remeseiro López, Beatriz; Martín Santamaría, María José (Elsevier Ireland Ltd., 2017)
      [Abstract] Background and objectives The analysis of the interference patterns on the tear film lipid layer is a useful clinical test to diagnose dry eye syndrome. This task can be automated with a high degree of accuracy ...
    • Parallelization of ARACNe, an Algorithm for the Reconstruction of Gene Regulatory Networks 

      Casal, Uxía; González-Domínguez, Jorge; Martín Santamaría, María José (M D P I AG, 2019-07-31)
      [Abstract] Gene regulatory networks are graphical representations of molecular regulators that interact with each other and with other substances in the cell to govern the gene expression. There are different computational ...