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Extending an Application-Level Checkpointing Tool to Provide Fault Tolerance Support to OpenMP Applications
(Technische Universitaet Graz * Institut fuer Informationssysteme und Computer Medien,Graz University of Technology, Institute for Information Systems and Computer Media, 2014-09)
[Abstract] Despite the increasing popularity of shared-memory systems, there is a lack of tools for providing fault tolerance support to shared-memory applications. CPPC (ComPiler for Portable Checkpointing) is an ...
A Portable and Adaptable Fault Tolerance Solution for Heterogeneous Applications
(Academic Press, 2017-06)
[Abstract] Heterogeneous systems have increased their popularity in recent years due to the high performance and reduced energy consumption capabilities provided by using devices such as GPUs or Xeon Phi accelerators. This ...
Fast search of third-order epistatic interactions on CPU and GPU clusters
(Sage Publications Ltd., 2019-05-27)
[Abstract]
Genome-Wide Association Studies (GWASs), analyses that try to find a link between a given phenotype (such as a disease) and genetic markers, have been growing in popularity in the recent years. Relations between ...
PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models
(BMC, 2022)
[Abstract] Background
Epistasis is the interaction between different genes when expressing a certain phenotype. If epistasis involves more than two loci it is called high-order epistasis. High-order epistasis is an area ...
A SIMD Algorithm for the Detection of Epistatic Interactions of Any Order
(Elsevier, 2022)
[Abstract] Epistasis is a phenomenon in which a phenotype outcome is determined by the interaction of genetic variation at two or more loci and it cannot be attributed to the additive combination of effects corresponding ...
Fiuncho: a program for any-order epistasis detection in CPU clusters
(Springer, 2022)
[Abstract]: Epistasis can be defined as the statistical interaction of genes during the expression of a phenotype. It is believed that it plays a fundamental role in gene expression, as individual genetic variants have ...
PARamrfinder: detecting allele-specific DNA methylation on multicore clusters
(Springer, 2024-01)
[Abstract]: The discovery of Allele-Specific Methylation (ASM) is an important research field in biology as it regulates genomic imprinting, which has been identified as the cause of some genetic diseases. Nevertheless, ...
Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite
(Pergamon Press, 2012-03)
[Abstract] Servet is a suite of benchmarks focused on detecting a set of parameters with high influence on the overall performance of multicore systems. These parameters can be used for autotuning codes to increase their ...
Performance Evaluation of Sparse Matrix Products in UPC
(Springer New York LLC, 2013-04)
[Abstract] Unified Parallel C (UPC) is a Partitioned Global Address Space (PGAS) language whose popularity has increased during the last years owing to its high programmability and reasonable performance through an efficient ...
UPCBLAS: a library for parallel matrix computations in Unified Parallel C
(John Wiley & Sons Ltd., 2012-09-25)
[Abstract] The popularity of Partitioned Global Address Space (PGAS) languages has increased during the last years thanks to their high programmability and performance through an efficient exploitation of data locality, ...