Buscar
Mostrando ítems 11-20 de 34
MPI-dot2dot: A Parallel Tool to Find DNA Tandem Repeats on Multicore Clusters
(Springer, 2022)
[Abstract] Tandem Repeats (TRs) are segments that occur several times in a DNA sequence, and each copy is adjacent to other. In the last few years, TRs have gained significant attention as they are thought to be related ...
SparkEC: speeding up alignment-based DNA error correction tools
(BioMed Central (Springer), 2022)
[Abstract]: In recent years, huge improvements have been made in the context of sequencing genomic data under what is called Next Generation Sequencing (NGS). However, the DNA reads generated by current NGS platforms are ...
CUDA-JMI: Acceleration of feature selection on heterogeneous systems
(Elsevier, 2020-01)
[Abstract]: Feature selection is a crucial step nowadays in machine learning and data analytics to remove irrelevant and redundant characteristics and thus to provide fast and reliable analyses. Many research works have ...
SMusket: Spark-based DNA error correction on distributed-memory systems
(Elsevier B.V., 2020)
[Abstract]: Next-Generation Sequencing (NGS) technologies have revolutionized genomics research over the last decade, bringing new opportunities for scientists to perform groundbreaking biological studies. Error correction ...
Real-time resource scaling platform for Big Data workloads on serverless environments
(2020)
The serverless execution paradigm is becoming an increasingly popular option when workloads are to be deployed in an abstracted way, more specifically, without specifying any infrastructure requirements. Currently, such ...
SeQual-Stream: approaching stream processing to quality control of NGS datasets
(BMC, 2023-10)
[Abstract]: Background
Quality control of DNA sequences is an important data preprocessing step in many genomic analyses. However, all existing parallel tools for this purpose are based on a batch processing model, ...
BigDEC: A multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction
(Elsevier, 2024-05)
[Abstract]: Despite the significant improvements in both throughput and cost provided by modern Next-Generation Sequencing (NGS) platforms, sequencing errors in NGS datasets can still degrade the quality of downstream ...
Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform
(Springer Netherlands, 2013-12)
[Abstract] Cloud computing is currently being explored by the scientific community to assess its suitability for High Performance Computing (HPC) environments. In this novel paradigm, compute and storage resources, as well ...
Analysis and evaluation of MapReduce solutions on an HPC cluster
(Pergamon Press, 2016-02)
[Abstract] The ever growing needs of Big Data applications are demanding challenging capabilities which cannot be handled easily by traditional systems, and thus more and more organizations are adopting High Performance ...
Low‐latency Java communication devices on RDMA‐enabled networks
(John Wiley & Sons Ltd., 2015)
[Abstract] Providing high‐performance inter‐node communication is a key capability for running high performance computing applications efficiently on parallel architectures. In fact, current systems deployments are aggregating ...