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Implementation of a motion estimation algorithm for Intel FPGAs using OpenCL
(Springer, 2023)
[Abstract]: Motion Estimation is one of the main tasks behind any video encoder. It is a computationally costly task; therefore, it is usually delegated to specific or reconfigurable hardware, such as FPGAs. Over the years, ...
PATO: genome-wide prediction of lncRNA-DNA triple helices
(Oxford University Press, 2023-03)
[Abstract]: Motivation: Long non-coding RNA (lncRNA) plays a key role in many biological processes. For instance, lncRNA regulates chromatin using different molecular mechanisms, including direct RNA-DNA hybridization via ...
A pipeline architecture for feature-based unsupervised clustering using multivariate time series from HPC jobs
(Elsevier B.V., 2023-05)
[Abstract]: Time series are key across industrial and research areas for their ability to model behaviour across time, making them ideal for a wide range of use cases such as event monitoring, trend prediction or anomaly ...
pRIblast: A highly efficient parallel application for comprehensive lncRNA–RNA interaction prediction
(Elsevier, 2023-01)
[Abstract]: Long non-coding RNAs (lncRNAs) play a key role in several biological processes and scientists are constantly trying to come up with new strategies to elucidate their functions. One common approach to characterize ...
Interactive Visualization of Large Point Clouds Using an Autotuning Multiresolution Out-Of-Core Strategy
(Oxford University Press, 2023)
[Abstract]: Due to the increasingly large amount of data acquired into point clouds, from LiDAR (Light Detection and Ranging) sensors and 2D/3D sensors, massive point clouds processing has become a topic with high interest ...
Floating Point Calculation of the Cube Function on FPGAs
(Institute of Electrical and Electronics Engineers, 2023)
[Abstract]: Specialized arithmetic units allow fast and efficient computation of lesser used mathematical functions. The overall impact of those units would be negligible in a general purpose processor, as added circuitry ...
ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters
(IEEE, 2023)
[Abstract]: The discovery of Differentially Methylated (DM) regions is an important research field in biology, as it can help to anticipate the risk of suffering from specific diseases. Nevertheless, the high computational ...
SeQual-Stream: approaching stream processing to quality control of NGS datasets
(BMC, 2023-10)
[Abstract]: Background
Quality control of DNA sequences is an important data preprocessing step in many genomic analyses. However, all existing parallel tools for this purpose are based on a batch processing model, ...