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MPI and UPC broadcast, scatter and gather algorithms in Xeon Phi
(John Wiley & Sons Ltd., 2016-05-06)
[Abstract] Accelerators have revolutionised the high performance computing (HPC) community. Despite their advantages, their very specific programming models and limited communication capabilities have kept them in a ...
Nonblocking collectives for scalable Java communications
(John Wiley & Sons Ltd., 2015-04-22)
[Abstract] This paper presents a Java implementation of the recently published MPI 3.0 nonblocking message passing collectives in order to analyze and assess the feasibility of taking advantage of these operations in shared ...
Flame-MR: An event-driven architecture for MapReduce applications
(Elsevier BV * North-Holland, 2016)
[Abstract] Nowadays, many organizations analyze their data with the MapReduce paradigm, most of them using the popular Apache Hadoop framework. As the data size managed by MapReduce applications is steadily increasing, the ...
F-MPJ: scalable Java message-passing communications on parallel systems
(Springer New York LLC, 2012-04)
[Abstract] This paper presents F-MPJ (Fast MPJ), a scalable and efficient Message-Passing in Java (MPJ) communication middleware for parallel computing. The increasing interest in Java as the programming language of the ...
Parallel simulation of Brownian dynamics on shared memory systems with OpenMP and Unified Parallel C
(Springer New York LLC, 2013-09)
[Abstract] The simulation of particle dynamics is an essential method to analyze and predict the behavior of molecules in a given medium. This work presents the design and implementation of a parallel simulation of Brownian ...
Design of efficient Java message-passing collectives on multi-core clusters
(Springer New York LLC, 2011-02)
[Abstract] This paper presents a scalable and efficient Message-Passing in Java (MPJ) collective communication library for parallel computing on multi-core architectures. The continuous increase in the number of cores per ...
Evaluation of messaging middleware for high-performance cloud computing
(Springer U K, 2013-12)
[Abstract]
Cloud computing is posing several challenges, such as security, fault tolerance, access interface singularity, and network constraints, both in terms of latency and bandwidth. In this scenario, the performance ...
High-performance computing selection of models of DNA substitution for multicore clusters
(Sage Publications Ltd., 2014)
[Abstract] This paper presents the high-performance computing (HPC) support of jModelTest2, the most popular bioinformatic tool for the statistical selection of models of DNA substitution. As this can demand vast computational ...
UPCBLAS: a library for parallel matrix computations in Unified Parallel C
(John Wiley & Sons Ltd., 2012-09-25)
[Abstract] The popularity of Partitioned Global Address Space (PGAS) languages has increased during the last years thanks to their high programmability and performance through an efficient exploitation of data locality, ...
The Servet 3.0 benchmark suite: characterization of network performance degradation
(Pergamon Press, 2013-11)
[Abstract] Servet is a suite of benchmarks focused on extracting a set of parameters with high influence on the overall performance of multicore clusters. These parameters can be used to optimize the performance of parallel ...