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MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems
(Oxford University Press, 2016)
[Abstracts] MSAProbs is a state-of-the-art protein multiple sequence alignment tool based on hidden Markov models. It can achieve high alignment accuracy at the expense of relatively long runtimes for large-scale input ...
Volatile STT-RAM Scratchpad Design and Data Allocation for Low Energy
(Association for Computing Machinery, 2015)
[Abstract] On-chip power consumption is one of the fundamental challenges of current technology scaling. Cache memories consume a sizable part of this power, particularly due to leakage energy. STT-RAM is one of several ...
Parallel Hierarchical Radiosity on Hybrid Platforms
(Springer Verlag, 2011-12)
[Abstract] Achieving an efficient realistic illumination is an important aim of research in computer graphics. In this paper a new parallel global illumination method for hybrid systems based on the hierarchical radiosity ...
In-memory application-level checkpoint-based migration for MPI programs
(Springer New York LLC, 2014)
[Abstract] Process migration provides many benefits for parallel environments including dynamic load balancing, data access locality or fault tolerance. This paper describes an in-memory application-level checkpoint-based ...
GPU Accelerated Molecular Docking Simulation with Genetic Algorithms
(Springer, Cham, 2016)
[Abstract] Receptor-Ligand Molecular Docking is a very computationally expensive process used to predict possible drug candidates for many diseases. A faster docking technique would help life scientists to discover better ...
Accelerating the HyperLogLog Cardinality Estimation Algorithm
(Hindawi, 2017)
[Abstract] In recent years, vast amounts of data of different kinds, from pictures and videos from our cameras to software logs from sensor networks and Internet routers operating day and night, are being generated. This ...
Developing adaptive multi-device applications with the Heterogeneous Programming Library
(Springer, 2015)
[Abstract] The usage of heterogeneous devices presents two main problems. One is their complex programming, a problem that grows when multiple devices are used. The second issue is that even if the codes for these devices ...
Failure Avoidance in MPI Applications Using an Application-Level Approach
(Oxford University Press, 2014)
[Abstract] Execution times of large-scale computational science and engineering parallel applications are usually longer than the mean-time-between-failures. For this reason, hardware failures must be tolerated by the ...
Multimethod optimization in the cloud: A case‐study in systems biology modelling
(Wiley, 2018-06-25)
[Abstract] Optimization problems appear in many different applications in science and engineering. A large number of different algorithms have been proposed for solving them; however, there is no unique general optimization ...
A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology
(Springer New York LLC, 2017)
[Abstract] Metaheuristics are gaining increasing recognition in many research areas, computational systems biology among them. Recent advances in metaheuristics can be helpful in locating the vicinity of the global solution ...